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SNV calling from NGS data is any of a rang … SNV calling from NGS data is any of a range of methods for identifying the existence of single nucleotide variants (SNVs) from the results of next generation sequencing (NGS) experiments. These are computational techniques, and are in contrast to special experimental methods based on known population-wide single nucleotide polymorphisms (see SNP genotyping). Due to the increasing abundance of NGS data, these techniques are becoming increasingly popular for performing SNP genotyping, with a wide variety of algorithms designed for specific experimental designs and applications. In addition to the usual application domain of SNP genotyping, these techniques have been successfully adapted to identify rare SNPs within a population, as well as detecting somatic SNVs within an individual using multiple tissue samples. individual using multiple tissue samples.
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http://bdgenomics.org/projects/avocado/ +
, http://mathgen.stats.ox.ac.uk/impute/impute_v2.html +
, http://compbio.bccrc.ca/software/jointsnvmix +
, http://gmt.genome.wustl.edu/somatic-sniper +
, https://github.com/Illumina/Pisces +
, http://www.htslib.org/ +
, https://github.com/Illumina/strelka +
, http://128.32.118.212/thorfinn/realSFS +
, https://sourceforge.net/p/ngsep/wiki/Home/ +
, http://soap.genomics.org.cn/index.html +
, https://github.com/AstraZeneca-NGS/VarDict +
, https://www.rdm.ox.ac.uk/research/lunter-group/lunter-group/platypus-a-haplotype-based-variant-caller-for-next-generation-sequence-data +
, http://varscan.sourceforge.net +
, http://reveel.stanford.edu/ +
, https://github.com/google/deepvariant +
, http://faculty.washington.edu/browning/beagle/beagle.html +
, https://github.com/ekg/freebayes +
, https://gatk.broadinstitute.org/ +
, https://github.com/skandlab/VarNet +
, https://github.com/bioinform/neusomatic +
, http://genome.sph.umich.edu/wiki/Thunder +
, https://github.com/bioinform/somaticseq +
, http://compbio.bccrc.ca/software/snvmix +
, https://magnolia.sh/ +
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| rdfs:comment |
SNV calling from NGS data is any of a rang … SNV calling from NGS data is any of a range of methods for identifying the existence of single nucleotide variants (SNVs) from the results of next generation sequencing (NGS) experiments. These are computational techniques, and are in contrast to special experimental methods based on known population-wide single nucleotide polymorphisms (see SNP genotyping). Due to the increasing abundance of NGS data, these techniques are becoming increasingly popular for performing SNP genotyping, with a wide variety of algorithms designed for specific experimental designs and applications. In addition to the usual application domain of SNP genotyping, these techniques have been successfully adapted to identify rare SNPs within a population, as well as detecting somatic SNVs within an individual using musomatic SNVs within an individual using mu
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| rdfs:label |
SNV calling from NGS data
|
