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|
The SdsR/RyeB RNA is a non-coding RNA that … The SdsR/RyeB RNA is a non-coding RNA that was identified in a large scale screen of E. coli. The exact 5′ and 3′ ends of this RNA are uncertain. This RNA overlaps the SraC/RyeA RNA on the opposite strand suggesting that the two may act in a concerted manner. It is transcribed by general stress factor σs and is most highly expressed in stationary phase. SdsR/RyeB RNA interacts with Hfq. The homologous sRNA in S. enterica was shown to regulate synthesis of major porin OmpD. A study using Salmonella identified 20 targets of this sRNA including transcriptional regulator, CRP, global DNA-binding factors, StpA and HupB, the antibiotic transporter protein, TolC, and the RtsA/B two-component system (TCS), and validated their post-transcriptional control by SdsR/RyeB RNA.-transcriptional control by SdsR/RyeB RNA.
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2561
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944584261
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http://dbpedia.org/resource/Secondary_structure +
, http://dbpedia.org/resource/RyeE_RNA +
, http://dbpedia.org/resource/Bacteria +
, http://dbpedia.org/resource/Salmonella_enterica +
, http://dbpedia.org/resource/RydB_RNA +
, http://dbpedia.org/resource/Category:Non-coding_RNA +
, http://dbpedia.org/resource/Gene +
, http://dbpedia.org/resource/E._coli +
, http://dbpedia.org/resource/RyhB_RNA +
, http://dbpedia.org/resource/Sequence_conservation +
, http://dbpedia.org/resource/Non-coding_RNA +
, http://dbpedia.org/resource/Hfq_protein +
, http://dbpedia.org/resource/Bacterial_small_RNA +
, http://dbpedia.org/resource/SraC/RyeA_RNA +
|
| http://dbpedia.org/property/caption
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Predicted secondary structure and sequence conservation of SdsR_RyeB
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| http://dbpedia.org/property/id
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RF00111
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| http://dbpedia.org/property/name
|
RyeB RNA
, SdsR/RyeB RNA
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RF00111
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http://dbpedia.org/resource/Bacterial_small_RNA +
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SdsR_RyeB
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http://dbpedia.org/resource/Bacteria +
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http://dbpedia.org/resource/Category:Non-coding_RNA +
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http://dbpedia.org/ontology/Protein +
|
| rdfs:comment |
The SdsR/RyeB RNA is a non-coding RNA that … The SdsR/RyeB RNA is a non-coding RNA that was identified in a large scale screen of E. coli. The exact 5′ and 3′ ends of this RNA are uncertain. This RNA overlaps the SraC/RyeA RNA on the opposite strand suggesting that the two may act in a concerted manner. It is transcribed by general stress factor σs and is most highly expressed in stationary phase. SdsR/RyeB RNA interacts with Hfq.y phase. SdsR/RyeB RNA interacts with Hfq.
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| rdfs:label |
RyeB RNA
|
