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Within computational biology, an MA plot i … Within computational biology, an MA plot is an application of a Bland–Altman plot for visual representation of genomic data. The plot visualizes the differences between measurements taken in two samples, by transforming the data onto M (log ratio) and A (mean average) scales, then plotting these values. Though originally applied in the context of two channel DNA microarray gene expression data, MA plots are also used to visualise high-throughput sequencing analysis.alise high-throughput sequencing analysis.
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https://cran.r-project.org/ +
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center
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MA Plot for raw data, note of the distortion in the upper ranges.
, MA Plot for quantile normalized data.
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Post Normalization
, Pre Normalization
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MA Plots.
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Pre-normalization.MAplot.png
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300
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| rdfs:comment |
Within computational biology, an MA plot i … Within computational biology, an MA plot is an application of a Bland–Altman plot for visual representation of genomic data. The plot visualizes the differences between measurements taken in two samples, by transforming the data onto M (log ratio) and A (mean average) scales, then plotting these values. Though originally applied in the context of two channel DNA microarray gene expression data, MA plots are also used to visualise high-throughput sequencing analysis.alise high-throughput sequencing analysis.
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MA plot
|
